Publications

For a full list of my peer-reviewed publications, please visit my Google Scholar profile.

Selected Publications

Using core genome and machine learning for serovar prediction in Salmonella enterica subspecies I strains
FEMS Microbiol. Lett. (2025)
https://doi.org/10.1093/femsle/fnaf040

Metagenomics evidence of a novel Thermoplasmata-like archaeon decomposing heterodisulfide in nonacidic estuary-ocean sediment
ACS ES&T Water 4 (12), 5800-5810 (2024)
https://doi.org/10.1021/acsestwater.4c00790

A novel Slope-Matrix-Graph algorithm to analyze compositional microbiome data
Microorganisms 12 (9), 1866 (2024)
https://doi.org/10.3390/microorganisms12091866

Virus-impacted community adaptation in oligotrophic groundwater revealed by Hi-C coupled metagenomic and viromic study
J. Hazard. Mater. 458, 131944 (2023)
https://doi.org/10.1016/j.jhazmat.2023.131944

In situ Nanopore sequencing reveals metabolic characteristics of the Qilian glacier meltwater microbiome
Environ Sci Pollut Res 30 (35), 84805–84813 (2023)
https://doi.org/10.1007/s11356-023-28250-0

Plastic materials and water sources actively select and shape wastewater plastisphere over time
Front Environ Sci Eng 16(11): 145 (2022)
https://doi.org/10.1007/s11783-022-1580-1

Developing a Bifidobacterium phage qPCR-based assay for tracking sewage pollution
Sci. Total Environ. 838, 155815 (2022)
https://doi.org/10.1016/j.scitotenv.2022.155815

Metagenomic and viromic data mining reveals viral threats in biologically treated domestic wastewater
Environ. Sci. Ecotechnol. 100105 (2021)
https://doi.org/10.1016/j.ese.2021.100105

A metagenomic-based method to study hospital air dust resistome
Chem. Eng. J. 406, 126854 (2021)
https://doi.org/10.1016/j.cej.2020.126854

Variable fecal source prioritization in recreational waters monitored with viral and bacterial indicators
Water Res. 116845 (2021)
https://doi.org/10.1016/j.watres.2021.116845

Large-scale implementation of standardized qPCR fecal source ID in Tillamook Bay Watershed
PLoS ONE 14(6): e0216827 (2019)
https://doi.org/10.1371/journal.pone.0216827

A novel MST microarray for pathogen detection and source identification in environmental systems
Environ. Sci. Technol. 49(12): 7319–7329 (2015)
https://doi.org/10.1021/acs.est.5b00980